PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014205-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 316aa    MW: 35167.3 Da    PI: 5.7144
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014205-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.27.1e-16220256135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg ++  Tp +Rrgp+g++tLCnaCGl+++ kg+
  AHYPO_014205-RA 220 CQHCGISEksTPAMRRGPSGPRTLCNACGLMWANKGT 256
                      *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.3E-583118IPR010399Tify domain
PROSITE profilePS5132012.14783118IPR010399Tify domain
PfamPF062008.1E-1088117IPR010399Tify domain
PROSITE profilePS5101712.282151193IPR010402CCT domain
PfamPF062032.2E-13151192IPR010402CCT domain
SMARTSM004012.1E-11214267IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-12218276No hitNo description
Gene3DG3DSA:3.30.50.103.6E-15218261IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501148.906218273IPR000679Zinc finger, GATA-type
CDDcd002021.21E-14219262No hitNo description
PfamPF003201.4E-13220256IPR000679Zinc finger, GATA-type
PROSITE patternPS003440220247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEQVISNRFE DQNQVAITEE DDDSFDTDTE EFSNGDEEIE VEDDEDEDKE AHVSIAIPGD  60
AMNIKSNLTS GASLMCSASS SLVRRKTGEL TIAFEGEVYV FPSVTHDKVQ AILLLLGGRD  120
LSTSVPTSEF LLQQHDMTTG DRPYGQKISH RIASLVRFRE KKKERCFDKK IRYTCRKEVT  180
QRMERKNGQF ASFKDRHKLA AGNWDPSDGT PPPECVLRTC QHCGISEKST PAMRRGPSGP  240
RTLCNACGLM WANKGTLRDL SKTGRIVPFQ GDRDSPSDRK PLAMEPGNSY GNQELQRCAE  300
GIAVHGKLNK GTRDF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021717242.11e-144GATA transcription factor 24-like
SwissprotQ5Z4U54e-62GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A0K9RKP21e-137A0A0K9RKP2_SPIOL; Uncharacterized protein
STRINGXP_010691384.11e-140(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-59ZIM-like 1