PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014235-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 319aa    MW: 34741.9 Da    PI: 6.697
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014235-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.33.3e-16239275135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg  +  Tp++Rrgp+g++tLCnaCGl+++ kg+
  AHYPO_014235-RA 239 CRHCGINEkaTPMMRRGPEGPRTLCNACGLMWANKGT 275
                      *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.3577112IPR010399Tify domain
SMARTSM009792.1E-577112IPR010399Tify domain
PfamPF062001.2E-882105IPR010399Tify domain
PROSITE profilePS5101713.245163205IPR010402CCT domain
PfamPF062033.7E-16163205IPR010402CCT domain
SMARTSM004015.0E-11233286IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-11236283No hitNo description
Gene3DG3DSA:3.30.50.102.4E-14237280IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.46E-14239291No hitNo description
PROSITE patternPS003440239266IPR000679Zinc finger, GATA-type
PfamPF003204.9E-14239275IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDDLHGGDAQ MHMTEAEQPL HVHYMHDQNH GMHHLSNDNG LEDDHDGVAA GTAEGIDGEL  60
HNHPGNGSDN HGGMMGAITD NNQLTLSFQG QVYVFDSVSP EKLKAFLCIC NGWVTTPVTV  120
VQAVLLLLGG REVPSTVPVL PLTSSQSNRG VAPTPQKFNV PQRLASLLRF REKRKERNFD  180
KKIRYTVRKE VALRMQRNKG QFTSSKPSQD EASSGATSWD SNQSWGPEGA VPLQLEVCCR  240
HCGINEKATP MMRRGPEGPR TLCNACGLMW ANKGTLRDLS KSAMPGGQNL SFPRSEEQNG  300
TFEANQMVIV AGNVSDST*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010696086.10.0PREDICTED: GATA transcription factor 28
SwissprotQ8GXL71e-119GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A0J8BB740.0A0A0J8BB74_BETVU; Uncharacterized protein
STRINGXP_010696086.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-124ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]