PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014298-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 266aa    MW: 29880.6 Da    PI: 9.8879
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014298-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603.1e-19103136134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C+ C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  AHYPO_014298-RA 103 CTDCHTTTTPLWRSGPQGPKSLCNACGIRQRKAR 136
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.57E-1395136No hitNo description
PROSITE profilePS5011413.07297133IPR000679Zinc finger, GATA-type
SMARTSM004011.3E-1997149IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.7E-16101136IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.10E-13102134No hitNo description
PROSITE patternPS003440103128IPR000679Zinc finger, GATA-type
PfamPF003206.1E-17103136IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MKASDLGRPC SSWLQTRLRD ENGCNTYAYS INLEEEQKNN ESVNYDDQKY SRKWKPSKVR  60
IMQKMMGKSK NSRDQITNNN SKQQIVDHDH LAKRQTSDGV RVCTDCHTTT TPLWRSGPQG  120
PKSLCNACGI RQRKARRAAM AAAAAAGFSS DTMVTSTEPP VQSPKPNKVE TIMKTQKGID  180
NLDKTHTLPL KKRTKIINAN KNNYTHNYSY NNNNNNSKKI CFEDFALSSN KDYINPNPKK  240
SFPRDEEEGA ILLMALSCGL ACSSY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021749841.11e-104putative GATA transcription factor 22
TrEMBLA0A0J8B3F77e-93A0A0J8B3F7_BETVU; Uncharacterized protein
STRINGXP_010667257.11e-93(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.14e-25cytokinin-responsive gata factor 1