PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014314-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 323aa    MW: 36948.4 Da    PI: 7.657
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014314-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.2e-1178103127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC  f + G+Ck G++C+FaHg+
  AHYPO_014314-RA  78 FKTRLCIKFEK-GQCKNGENCNFAHGE 103
                      79*********.*************96 PP
2zf-CCCH21.54.2e-07139160425
                      ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                      +lC  f+ + +C+yG+rC+F+H
  AHYPO_014314-RA 139 KLCWKFYNGEECPYGARCNFSH 160
                      6777888855************ PP
3zf-CCCH34.43.7e-11212238127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC  f+ tG+C++Gd+C +aHg+
  AHYPO_014314-RA 212 WKTKLCTKFQVTGHCPFGDNCYYAHGQ 238
                      8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-876108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-1576110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.29577104IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-677103IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-978103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6135163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.211135163IPR000571Zinc finger, CCCH-type
SMARTSM003560.03136162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-7138161IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4139160IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-10210241IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-6211238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-13211240IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-9212238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788212239IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSFCDSFPPF APFPNGINSM AVWPQFPYKQ SGENSIFDHE SPPMKRPKIS SNSQFPNQNH  60
GTHQMNPPVN QPNGKIFFKT RLCIKFEKGQ CKNGENCNFA HGEEDLRKPP PNWQELIGSR  120
MEDKMNNWED DDKMISRKKL CWKFYNGEEC PYGARCNFSH ERPPKFWDNS TRFRDDHREC  180
FSTSIGTIRS SDQYANANGD AMRGNSRPAV HWKTKLCTKF QVTGHCPFGD NCYYAHGQEE  240
VLLPGDRPSE TDESKTHYVP LKCGSTMDIV PIPSKAYVAV ASTQSVQPKN GFTKWKLNKK  300
MNGIYGDWID DQPLILPNEE EN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010676669.11e-125PREDICTED: zinc finger CCCH domain-containing protein 39
TrEMBLA0A0K9R3T91e-109A0A0K9R3T9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010676669.11e-124(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-61C3H family protein