PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_014346-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

M-type_MADS

Protein Properties

Length: 166aa MW: 19475.4 Da PI: 8.8828

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_014346-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.2	1.4e-15	10	51	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ienk r vt +kR ng+l K ELS+LC+++v+ ii+ + AHYPO_014346-RA 10 YIENKNTRRVTCIKRCNGLLNKTRELSILCGVDVCTIIYHPY 51 59************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	16.54	1	48	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.06E-19	1	78	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.8E-19	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.9E-8	3	23	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.53E-21	3	75	No hit	No description
Pfam	PF00319	4.7E-16	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.9E-8	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MEKKKLKLQY IENKNTRRVT CIKRCNGLLN KTRELSILCG VDVCTIIYHP YSDVAVTWPE 60 SEQKIKQIIF EFENKQNNSK SDRQFDQKSY LTQYVKKSED KLNKIREKNR ELDMENIATD 120 LLNGKPIEDV LFDDLNDLLT VINSKMNIIQ HRLKLLHENT TNNSL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010675118.1	3e-50	PREDICTED: agamous-like MADS-box protein AGL80
STRING	XP_010675118.1	1e-49	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27960.1	1e-25	AGAMOUS-like 90

Link Out ? help Back to Top
Phytozome	AHYPO_014346-RA