PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014376-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Dof
Protein Properties Length: 336aa    MW: 36363.3 Da    PI: 7.1218
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014376-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.82.4e-3876135261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grr+nk+ 
  AHYPO_014376-RA  76 PDKILPCPRCNSSDTKFCYFNNYNVNQPRHFCKSCQRYWTAGGTVRNVPVGAGRRRNKHL 135
                      68999*****************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2969133IPR003851Zinc finger, Dof-type
PfamPF027019.3E-3278134IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.72380134IPR003851Zinc finger, Dof-type
PROSITE patternPS01361082118IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MFIWDNGSSL IAKPETEEYR NGNSSIMDEV VSFGPCKGDQ TQSSTKQPIT SVETTKLKSQ  60
QEESDGTTEQ KEMRRPDKIL PCPRCNSSDT KFCYFNNYNV NQPRHFCKSC QRYWTAGGTV  120
RNVPVGAGRR RNKHLASQYR QVMASSDGGP TMVAEAADTD SQLFSCEDSS RSCTASSPNE  180
MVLKFGPDSP HCVDSTPNLS SNNESNSCSK INHCNSSASL QHMYQYIVPP QITPPGSHST  240
GSVSLAVPGL AAPNVSYQIV PAAYMNCIPV WVAGSGNISL ALTNSCVSPS FLSSSTRLQV  300
LGKHSRDVNP PSDTGRTEEG ISASKSLRIH ELNDT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695534.11e-160PREDICTED: cyclic dof factor 2
TrEMBLA0A0J8B9K01e-159A0A0J8B9K0_BETVU; Uncharacterized protein
STRINGXP_010695534.11e-160(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.22e-41cycling DOF factor 2