PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014407-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 244aa    MW: 28415.2 Da    PI: 9.9602
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014407-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.31.2e-31187244158
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      ldDgy+WrKYGqK+vk+s +prsYYrCt+++C+vkk+ver +ed ++v++tYeg+Hnh
  AHYPO_014407-RA 187 LDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNH 244
                      59*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-33172244IPR003657WRKY domain
SuperFamilySSF1182904.18E-28179244IPR003657WRKY domain
PROSITE profilePS5081130.274182244IPR003657WRKY domain
SMARTSM007741.3E-33187244IPR003657WRKY domain
PfamPF031067.6E-25188244IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MERDHTKNNN NFLNYDLHMS LIHTNNHHQE NSSNNINLQG FHTLELPNNH HPTNNNLMLT  60
TFLHPPPPQP PPSTYHQITR HRTLTDAPNT ATTTTTTKGL VGNFDNYVAS TRQSWNSNNT  120
HHQQVEGSSD PKATVNGDHS NGNGRNDNGA DHSWWKSSNS EKNKMKIRRK LREPRFCFQT  180
RSDIDVLDDG YKWRKYGQKV VKNSLHPRSY YRCTHNNCRV KKRVERLSED CRMVITTYEG  240
RHNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-26178244874Probable WRKY transcription factor 4
2lex_A8e-26178244874Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171KIRRKLR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00618PBMTransfer from AT2G44745Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010692038.11e-113PREDICTED: probable WRKY transcription factor 48
TrEMBLA0A0K9RFP63e-70A0A0K9RFP6_SPIOL; Uncharacterized protein
STRINGXP_010692038.11e-113(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.12e-54WRKY family protein