PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014422-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 457aa    MW: 50072.7 Da    PI: 6.5648
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014422-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like74.12e-23255301147
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvk 47 
                      k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vk
  AHYPO_014422-RA 255 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVK 301
                      68********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.24E-9252301IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-18253301IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-18255301IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MMTSPTELSL ECKPQSYSML LKSFGGDVIN NPTDQQATQK LQDYLTRLEE ERLKIDAFKR  60
ELPLCMQLLT QAMEVSRQQL QSCRSNNEGT RPVLEEFMPI KQSNMEGSDQ KQTNTSDKEN  120
WMLSAQLWSQ AGDPNKQQSS ILPKSEADHN TFNNVGNCPK LGLDNKQRNG GAFLPFTKER  180
SLIPNNSSIM ALPDLALVSN EREMEEKKCT DSENGMSDNS NKISNVMVGK AVDSQSPTNT  240
TTTPATPTSS QTHRKARRCW SPDLHRRFVN ALQMLGGSQV ATPKQIRELM KVDGLTNDEV  300
KRAPAPQLVV LGGIWVPPEY ATAAAAAHGG PPTIYSTHPS TQVSSHYCSP TVPSDFYPQA  360
SSAPQALHLS ALHHHQHPQL HVYKTASHTQ TTHSSPESDG HGAGNRSESM EDGKSESSSW  420
KGESGGENGG DQRNKLAALR VEDGESMNGS EITLKF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866139.10.0myb family transcription factor EFM
TrEMBLA0A0K9RN430.0A0A0K9RN43_SPIOL; Uncharacterized protein
STRINGXP_010688115.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-102G2-like family protein