PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_014507-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NF-YB

Protein Properties

Length: 256aa MW: 28152.2 Da PI: 4.4787

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_014507-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	147.3	3.3e-46	36	130	2	96
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 reqd++lPi+n++rim+ +lPa+akis++aket+q+cvsefisfvt+ea+d+cq+++rkti++ddl+ a++ lGf+d+v pl yl++yre ++ AHYPO_014507-RA 36 REQDQYLPISNIIRIMRTILPAHAKISDEAKETLQQCVSEFISFVTEEANDRCQKQHRKTITADDLIEAMCRLGFDDFVGPLFRYLHRYRESQR 129 89*****************************************************************************************987 PP NF-YB 96 e 96 + AHYPO_014507-RA 130 Q 130 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.1E-43	35	131	IPR009072	Histone-fold
SuperFamily	SSF47113	2.02E-34	38	131	IPR009072	Histone-fold
Pfam	PF00808	4.0E-23	41	105	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	6.0E-9	69	87	No hit	No description
PRINTS	PR00615	6.0E-9	88	106	No hit	No description
PRINTS	PR00615	6.0E-9	107	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MTGNNNVGNT NNANNQAANT TSPPQNGRPP LPPTLREQDQ YLPISNIIRI MRTILPAHAK 60 ISDEAKETLQ QCVSEFISFV TEEANDRCQK QHRKTITADD LIEAMCRLGF DDFVGPLFRY 120 LHRYRESQRQ TYGGPITRSR SMSLAAPTMM VRPPSMMDLD PIYYYPYIQG NNNNNNIAAN 180 VKEDGGSESE DKLMNIINSI DFDVGGSSNI DDVGMLGFDE NFDFPAVDGS APANNSQDIG 240 TLTNNGKGAV DHIDG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-45	34	126	5	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021288282.1	4e-48	nuclear transcription factor Y subunit B-3-like
TrEMBL	A0A2Z6MQ64	1e-46	A0A2Z6MQ64_TRISU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	2e-46	nuclear factor Y, subunit B6

Link Out ? help Back to Top
Phytozome	AHYPO_014507-RA