PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014539-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family E2F/DP
Protein Properties Length: 389aa    MW: 42905.2 Da    PI: 7.4591
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014539-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.21.2e-2792174271
          E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  AHYPO_014539-RA  92 NGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEyadannalgpneqpgyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 174
                      789********...*****999*******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094042.0E-1247388IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.108.0E-4587178IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.9E-3391174IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.2E-2493174IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.14E-2094175IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144582.24E-43180282IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.23E-41180285No hitNo description
SMARTSM011381.1E-60181350IPR014889Transcription factor DP, C-terminal
PfamPF087812.8E-40182297IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MVPGNFQEDG ERDPRGVMLS GAPSVSGQLV STNGSVGSAS RQSEAGMATP ARDYTALKLS  60
HLEIHGDDSA SQGAAMSKKK KRGQRASGTE KNGRGLRQFS MKVCEKVESK GRTTYNEVAD  120
ELVAEYADAN NALGPNEQPG YDEKNIRRRV YDALNVLMAM DIISKDKKEI QWKGLPRTCL  180
NDIEELKTQR TGLRNKIEKK AAYLQELEEQ FVGYQNLTQR NQQLYGNGNA PTGGVALPFI  240
LVQTRPNATV EVEISEDMQL VHFDFNSTPF ELHDDNYVLK QMRFCNKPLI DGEACTTLAN  300
TGEGPSIMAD AYNLQTSEPC SPRPYQNQIS QPLSPSKSYY PQTCTPPSPS ITYQHQMPLP  360
PSRSNTTMKT ATSPPLPGIL KSRVQHER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-3585176190PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021733541.10.0transcription factor-like protein DPB
RefseqXP_021733542.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-137DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0K9RGC00.0A0A0K9RGC0_SPIOL; Uncharacterized protein
STRINGXP_010678871.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-139Transcription factor DP