PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014619-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 734aa    MW: 81706.5 Da    PI: 6.3856
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014619-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.4e-07124146427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      ++C ff++ G+C   drC+F+Hgp
  AHYPO_014619-RA 124 VPCIFFQK-GYCLKADRCPFMHGP 146
                      79******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.6763260IPR000571Zinc finger, CCCH-type
SMARTSM003560.0263259IPR000571Zinc finger, CCCH-type
PfamPF156632.4E-113286No hitNo description
PROSITE profilePS5010311.166288IPR000571Zinc finger, CCCH-type
SMARTSM003560.26487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.211120147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5121145IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5121146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4124146IPR000571Zinc finger, CCCH-type
PfamPF146080.26125145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MAATTAITKE PQQGGGGPSS SSSNMAEDES VKRNTDCVYF LASPLTCKKG HECEYRHSEY  60
ARINPRDCWY WLNGNCLNPK CSFRHPPLDG LVSPKAGNLA GHSVLVPPIP PVPATTQNPS  120
KQGVPCIFFQ KGYCLKADRC PFMHGPNHPS TKTQQVPASN IAPDALVFKK TFGTNDKRTQ  180
PKTNLQVTTT KVVETPSPKI TILKGQSSRT VNGEPAGRAY IPPNGLIEEV PKYEKFKPGS  240
VNNGILRSRT GRAHDGGLYD DQKFQNGREA DDSLRDSSPG FDVLVDDKLN EDEYYPDDQY  300
VRMQGRDGRN LNEFDMGHQD DYNSIGDFDP EFNHSGRVYD SFDRLSENAL DHHRPSSERS  360
LGEPADYDRR GSYKSQSPDF NQNSDLRNRL SKQRRVNGLK SVVNSDYSID HYAENQGYRS  420
TQRNSRRSPI HEASRGHRLQ DRIKIPRRSS PVRGNMYSER ENERGRNWGR SSPSRPQVYG  480
QQGHLRDRLN GRIKDESRGP PVRKDTVAAI DTDFPAPKRL LELKGIKQSD IKLQQSKSIQ  540
SGYGRNVRDT VLASSNATEG DLSFEGPKPL SEILKRKRKA PTGTNSVNKE EIKQTENDVN  600
ITSSASNSDA NTGKQTTLSS ASDQNKAGEI DNKPLAVEAI DKEGEISHKK IKLNGDSEAE  660
SSSPKMDGKH PKVEEESTVA DNADQEYKEE YEQDDGTYEY EQFDGEGETG DNEVDSMDEE  720
DGDDFAKQLG VSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680041.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A0K9QEN30.0A0A0K9QEN3_SPIOL; Uncharacterized protein
STRINGXP_010680041.10.0(Beta vulgaris)