PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014705-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 509aa    MW: 55626.4 Da    PI: 7.1439
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014705-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.28.3e-34223279259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK+vkgsefprsYY+Ct+a+Cpv+kkvers  d++v+ei+Y+g+Hnh+
  AHYPO_014705-RA 223 DDGYNWRKYGQKHVKGSEFPRSYYKCTHASCPVRKKVERSL-DGQVTEIIYKGQHNHQ 279
                      8****************************************.***************8 PP
2WRKY88.17.5e-28397464159
                      ---SS-EEEEEEE--TT-SS-E.........EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefpr.........sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++pr         sYY+Ct++gC+v+k+ver+ +dpk+v++tYeg+Hnh+
  AHYPO_014705-RA 397 LDDGYRWRKYGQKVVKGNPYPRqfnvaaaftSYYKCTHPGCNVRKQVERAPSDPKAVVTTYEGKHNHD 464
                      59*******************97777777778***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-30208281IPR003657WRKY domain
SuperFamilySSF1182902.62E-26220281IPR003657WRKY domain
SMARTSM007742.6E-37222280IPR003657WRKY domain
PROSITE profilePS5081124.248223281IPR003657WRKY domain
PfamPF031066.3E-26223279IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-34382466IPR003657WRKY domain
SuperFamilySSF1182901.44E-26389466IPR003657WRKY domain
PROSITE profilePS5081132.994392466IPR003657WRKY domain
SMARTSM007742.5E-38397465IPR003657WRKY domain
PfamPF031068.9E-21398464IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MAENDPIPST KPPQPQRPTI TLPSRAGIES LFSGSGFGLS PGPMTLVSSF FSENDPDSDC  60
RSFSQLLAGA IASPRPPSEP DQLRFKDNRP PGLVISQPQP QSQVGVGVGG GFFLLSPGVS  120
PALLLDSPGL FPGQGPFGMS HQQALAQVTA QAQAMQQAQQ GGFQSSTTVG GSEPQSTFTP  180
ELEMQQKMMS SASESKETEE PAQYSGSEQR LQTSSIIVDK PADDGYNWRK YGQKHVKGSE  240
FPRSYYKCTH ASCPVRKKVE RSLDGQVTEI IYKGQHNHQP PQKKSKDGGN PNGNLGNQGN  300
PELVSQTQPN NTNSMSEGMA RSLSRRDQES SQATADQLSS DEEEVDNDRT KEAGGDEDER  360
DAKRRNIEVR VTEQAASHRT VTEPKIVVQT TSEVDLLDDG YRWRKYGQKV VKGNPYPRQF  420
NVAAAFTSYY KCTHPGCNVR KQVERAPSDP KAVVTTYEGK HNHDIPAARM SSHNTANSSS  480
HLRPHKTEYA NTREQPVATL RLKEERIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-38223467878Probable WRKY transcription factor 4
2lex_A1e-38223467878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021739996.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-155WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0K9R3N80.0A0A0K9R3N8_SPIOL; Uncharacterized protein
STRINGXP_010683088.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-122WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]