PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014722-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 352aa    MW: 39405.4 Da    PI: 5.0637
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014722-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09140185555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +Er+RR+ + + f  L  ++P +     kK++K ++L +A++Y+k+L+
  AHYPO_014722-RA 140 HILAERKRRELLSQMFISLSAIIPGL-----KKMDKTSVLGEAIKYMKQLK 185
                      8899**********************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-14134198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.176135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7140184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.50E-10140189No hitNo description
Gene3DG3DSA:4.10.280.101.1E-13140199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-12141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550212.89E-5264345No hitNo description
Gene3DG3DSA:3.30.70.2603.8E-4267303No hitNo description
CDDcd021160.00181270312No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEAWLAELEK DVDPVISSLI SNNPYHEYEE IEVMEASFEE QLGATLGEDF PYPFSSKSSK  60
RNCINSTSPD QWEDFIDQFM EMPPGAMHHS SSTESLITTT SSVITSPCNK TNVQQHQQLV  120
NKEEINKPKR KRQPSQVQGH ILAERKRREL LSQMFISLSA IIPGLKKMDK TSVLGEAIKY  180
MKQLKEKVKT LEEMAVKRNV ESMVVVKKSQ VIMDDESLGD DNNNDSSSIV EDTCGSGNRG  240
DNPNNGNEED NNDPLPEIEV KISGQTILMR IHCQNQKGIL TTIFAELDKH DINITSCSVI  300
PFDTLALDIT IVAQMEMGFN NNVRSFVRSL CTSIRSAGRK HNASCQIHHS T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129147RKRQPSQVQGHILAERKRR
2143148ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683069.11e-113PREDICTED: transcription factor bHLH18-like
TrEMBLA0A0J8B7C83e-99A0A0J8B7C8_BETVU; Uncharacterized protein
STRINGXP_010683069.11e-112(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-42bHLH family protein