PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014723-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family FAR1
Protein Properties Length: 176aa    MW: 20650.8 Da    PI: 8.9115
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014723-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.23.4e-1023842290
             FAR1 22 skrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                      +r+g++++++f C ++gk++++  + +k+rr+++++++gC a+l       ++w+vt l+++HnH++ 
  AHYPO_014723-RA 23 DTRHGRTIRQEFLCHCYGKPRPKVIDMSKNRRNKSSSKCGCSARL-------QEWHVTVLVKQHNHPML 84
                     5678999*******************9****************98.......48************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.0E-82384IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MIDFDLNELV IEEDEDAPFD RTDTRHGRTI RQEFLCHCYG KPRPKVIDMS KNRRNKSSSK  60
CGCSARLQEW HVTVLVKQHN HPMLSHEELR FLPSNRSITP QDEKKILLYK EAGLSIRQII  120
RVMELEKNLK HSELPFLERD IRNLYGKVKK LIGVEDANNL KEYLKSAKEE NKMHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021756202.12e-66subtilisin-like protease SBT5.4
TrEMBLA0A2U1Q8L57e-44A0A2U1Q8L5_ARTAN; Protein FAR1-RELATED SEQUENCE 11
STRINGXP_010689388.12e-47(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.12e-25FAR1-related sequence 11