PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014743-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARR-B
Protein Properties Length: 424aa    MW: 47992.5 Da    PI: 7.3272
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014743-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.81.8e-26188241255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +r+rWt+ LH++F+eav++LGG++kA+Pk+i+e+++ + Lt+e+++SHLQkYR 
  AHYPO_014743-RA 188 ERIRWTQPLHDKFLEAVAKLGGADKAVPKKIMEMIGDHQLTRENIASHLQKYRK 241
                      79***************************************************6 PP
2Response_reg65.42.7e-22191251108
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+p+ ++ ++ +l k +y +v+e ++++eal llk+++  +D++++ + m ++dG++ll+   e++  +p+i+ +a++e+e++++ ++ 
  AHYPO_014743-RA  19 VLVVDDSPVCLKYIAALLLKCRY-QVTEKKSSREALMLLKQNEnkFDIVVTNVHMNEIDGFKLLEAGLEHD--IPVIMTSASDEMEMIKKGVRH 109
                      89*********************.***************777778******************99766655..********************* PP

                      TESEEEESS--HHHHH CS
     Response_reg  93 GakdflsKpfdpeelv 108
                      Ga dfl+Kp+   e+ 
  AHYPO_014743-RA 110 GAVDFLVKPVGLCEIK 125
                      *********9987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.57E-2815135IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.9E-3216166No hitNo description
SMARTSM004482.7E-2117128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.68818132IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.8E-1919126IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.02E-2220131No hitNo description
PROSITE profilePS5129410.017184244IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-24184245IPR009057Homeodomain-like
SuperFamilySSF466892.69E-15185245IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-23188241IPR006447Myb domain, plants
PfamPF002492.6E-7191240IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MENIINVNNN LQFPDGMRVL VVDDSPVCLK YIAALLLKCR YQVTEKKSSR EALMLLKQNE  60
NKFDIVVTNV HMNEIDGFKL LEAGLEHDIP VIMTSASDEM EMIKKGVRHG AVDFLVKPVG  120
LCEIKNIWQH VYRKNLPTKT CKHDDKNEDE DEDEDDDIVG FNVPQKNKKS SKKRKKSRDA  180
LEEASKRERI RWTQPLHDKF LEAVAKLGGA DKAVPKKIME MIGDHQLTRE NIASHLQKYR  240
KTFKKNYMGA DNRKLNDTAV STAETTTDAS SLLISVPNQF SPDFMNVGCS GSTFVRYRHH  300
NMPMMNNETS TRGLVCAPAP ANCAQYQQSN WLSQGVQPLQ LQPMLSNQAM QHQPMMHFRG  360
NLVAGNSFAQ PNNQTPQQQQ QQQQQYAGMP VTNNASTFTA VSNENFSVMG CFSNADWLFD  420
EFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-14184245262ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171175KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGSolyc07g005140.2.12e-63(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.12e-56response regulator 10