PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_014758-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NAC

Protein Properties

Length: 234aa MW: 26282.8 Da PI: 5.8647

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_014758-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	57.9	3.5e-18	9	56	1	49
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 +ppGfrFhPtdeel+++yLkkk++ +k+++ evi+evd++k+ePw+L+ AHYPO_014758-RA 9 VPPGFRFHPTDEELLHYYLKKKITFQKFDM-EVIREVDLNKMEPWELQV 56 69**************************.99************83 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	9.55E-17	8	55	IPR003441	NAC domain
PROSITE profile	PS51005	11.963	9	174	IPR003441	NAC domain
Pfam	PF02365	5.4E-8	10	52	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MGSSSNGGVP PGFRFHPTDE ELLHYYLKKK ITFQKFDMEV IREVDLNKME PWELQVGNEQ 60 GGATASATSD QLLCNPTGSS CNDQSRAFIP RDHNNNPHYQ HHLLLRNDPQ PTSSFDLYMK 120 PDLGLHSYSH PHQIAALSHP DHYTTNPHHL YQATGACEAG PTALEMGTCE SSNPHHQGIN 180 EWTMLDRVVG HQQDDDQQAS ADNLTSAVHE MNQQQQHQQL SLRGEMDFWG YAK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010688726.1	5e-85	PREDICTED: protein BEARSKIN2
TrEMBL	A0A0K9S0Z7	1e-55	A0A0K9S0Z7_SPIOL; Uncharacterized protein
STRING	XP_010688726.1	2e-84	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	3e-31	NAC domain containing protein 70

Link Out ? help Back to Top
Phytozome	AHYPO_014758-RA