PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014793-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 441aa    MW: 47910.1 Da    PI: 7.6588
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014793-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-08118139426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      + C+++ + G C yGd+Ck+ H+
  AHYPO_014793-RA 118 RVCNYWIQ-GNCTYGDNCKYLHS 139
                      78******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.5262753IPR000571Zinc finger, CCCH-type
SMARTSM003560.0522952IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577114141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-8114139IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6116140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-7118136IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-5118139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.104.4E-17137253IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509785.22E-45144192IPR017986WD40-repeat-containing domain
SMARTSM003202.3E-5145183IPR001680WD40 repeat
PfamPF004003.7E-5147183IPR001680WD40 repeat
PROSITE profilePS5029419.591152353IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.912152192IPR001680WD40 repeat
PRINTSPR003205.3E-7170184IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780170184IPR019775WD40 repeat, conserved site
SMARTSM0032019223260IPR001680WD40 repeat
SuperFamilySSF509785.22E-45230434IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.105.5E-29254433IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0022267304IPR001680WD40 repeat
PfamPF004008.2E-4271304IPR001680WD40 repeat
PROSITE profilePS5008212.213274313IPR001680WD40 repeat
PRINTSPR003205.3E-7291305IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780291305IPR019775WD40 repeat, conserved site
SMARTSM003200.0013307344IPR001680WD40 repeat
PfamPF004000.084309343IPR001680WD40 repeat
PRINTSPR003205.3E-7331345IPR020472G-protein beta WD-40 repeat
SMARTSM0032034348391IPR001680WD40 repeat
SMARTSM003202.3394431IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDIESNGNNK RIYNRLGTRQ PQSNNQNHNQ KVCFHWQAGR CTRSPCAFLH RELPPPLPQS  60
THPSTSSYNG GASKRTHGGL GSGGRNDGFS SRKNPNFNNT WGRVGGSSGG GPVNKMERVC  120
NYWIQGNCTY GDNCKYLHSW SIGDSFSLLT TLEGHQKVVT GITLPSGDKL YSGSQDEHVK  180
IWDCSSGQCV STIPVGGEIG CMISEGPWVF IGLPNMVKAW NIETVTDLSL SGPVGQVYGL  240
VVGNDLLFAG TQDGSILAWK FNPTTNCFEP AASLTGHTSA VVTMFVGANR LYSGSMDHTI  300
RVWNLETLQC IQILKEHTEV VMSVLCWEQF LLSASLDNTI KVWAATPSGN LEVTYTHTEK  360
QGILSLCGMH DSGGKPVLLC STNANDVHIY DLPSFMERGK IMSKKEIRVI QAGPSGLFFT  420
GDGNGQVRVW NWLTAPTTGI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A6e-201494318323Tako8
6g6n_A6e-201494318323Tako8
6g6n_B6e-201494318323Tako8
6g6n_C6e-201494318323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693461.10.0PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A0K9QWH90.0A0A0K9QWH9_SPIOL; Uncharacterized protein
STRINGXP_010693461.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1