PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014805-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 301aa    MW: 31832.9 Da    PI: 9.9607
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014805-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.26e-08105130227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt+ C++f  +  Ck+Gd+C+FaHg+
  AHYPO_014805-RA 105 KTKMCNRFNSSEGCKFGDKCHFAHGE 130
                      899*********************96 PP
2zf-CCCH33.47.9e-11268291226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      kt+lC +f + G C +GdrC+FaHg
  AHYPO_014805-RA 268 KTKLCENFTK-GSCTFGDRCRFAHG 291
                      8*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.4513765IPR000571Zinc finger, CCCH-type
SMARTSM003566.33764IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-53863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-63962IPR000571Zinc finger, CCCH-type
PfamPF146080.994562No hitNo description
SMARTSM003560.14103130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554103131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-13105134IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-5105130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-8105133IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.05E-14170246IPR004088K Homology domain, type 1
SMARTSM003222.4E-11173243IPR004087K Homology domain
PROSITE profilePS5008414.906174238IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.1E-16174245IPR004088K Homology domain, type 1
CDDcd001052.04E-14176239No hitNo description
PfamPF000134.2E-11176240IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.6E-13266297IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-8266296IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5266292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563267293IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8268291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEFGGPRKRN RSDVALNGNG GFKKSRPELE SFTTGVGSKS KPCTKFFSTT GCQFGEGCHF  60
LHYVPGGYKA VSQMMNLGNT PAPPPARNVA APPSFPDGAA SQGGKTKMCN RFNSSEGCKF  120
GDKCHFAHGE WELGRPSLPS YEDPHGMGLM GDRIGGRMEP LPPSRGGATN FGVSATAKIS  180
IDASLAGAVI GKSGSNSKQI SRVTGVKLAI RDHDTDSTKK NIELEGTFDQ IKQASAMVEE  240
LIRNVKGASG PPVKQSHGRE PGGGSHHKTK LCENFTKGSC TFGDRCRFAH GAEQLRKSAI  300
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673537.11e-165PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X1
SwissprotQ7F8R01e-106C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A0K9S1U11e-161A0A0K9S1U1_SPIOL; Uncharacterized protein
STRINGXP_010673537.11e-164(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-54C3H family protein