PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_014862-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Dof

Protein Properties

Length: 398aa MW: 42317.5 Da PI: 8.4123

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_014862-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.4	1.5e-38	81	139	5	63
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +kcprCdstntkfCyynnyslsqPr+fCk+CrryWtkGG lrnvPvGgg+r+nk+sss AHYPO_014862-RA 81 PQKCPRCDSTNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGNLRNVPVGGGCRRNKRSSS 139 689****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-26	62	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.245	82	136	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-32	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MVFSSVPLYL DPPNWNQQII QGNGNHDQNQ HLIQPPPIQQ PPQSQMGIGG GPGGGQGGPA 60 IRPNSMAERA RQLKIPPPEI PQKCPRCDST NTKFCYYNNY SLSQPRHFCK TCRRYWTKGG 120 NLRNVPVGGG CRRNKRSSSK SSSGGGGGGG SPSSSKSSLS SQNILGGERI PLHMDLVSTS 180 GLGPTIPGLP SSGGGTGMPS FMASLQNIAQ LGMGNLGLTF GGALNTLPHH SLEGLRGLNG 240 SGSDGSGLNE NRHHHNLDQF PHLNPNNSTT TQIQFPNFLG GFEIPCSSGM FNSSYQNDQI 300 GDNNNDENQQ QSNDGMPKSC SSQFAPIKME NDGHSGFNLH KQFLNNISSS DNNNNNQVTG 360 NNQFWGGNNT TNINTSAATT MWTDLSGLNS SSSNHLL*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MVFSSVPLYL DPPNWNQQII QGNGNHDQNQ HLIQPPPIQQ PPQSQMGIGG GPGGGQGGPA  60
IRPNSMAERA RQLKIPPPEI PQKCPRCDST NTKFCYYNNY SLSQPRHFCK TCRRYWTKGG  120
NLRNVPVGGG CRRNKRSSSK SSSGGGGGGG SPSSSKSSLS SQNILGGERI PLHMDLVSTS  180
GLGPTIPGLP SSGGGTGMPS FMASLQNIAQ LGMGNLGLTF GGALNTLPHH SLEGLRGLNG  240
SGSDGSGLNE NRHHHNLDQF PHLNPNNSTT TQIQFPNFLG GFEIPCSSGM FNSSYQNDQI  300
GDNNNDENQQ QSNDGMPKSC SSQFAPIKME NDGHSGFNLH KQFLNNISSS DNNNNNQVTG  360
NNQFWGGNNT TNINTSAATT MWTDLSGLNS SSSNHLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010685788.1	1e-119	PREDICTED: dof zinc finger protein DOF2.4 isoform X1
TrEMBL	A0A0K9QXD0	1e-106	A0A0K9QXD0_SPIOL; Uncharacterized protein
STRING	XP_010685788.1	1e-118	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.3	1e-32	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	AHYPO_014862-RA