PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014867-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WOX
Protein Properties Length: 128aa    MW: 14909.9 Da    PI: 10.6365
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014867-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.72.6e-152501557
                     HHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox 15 LeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     Le+++ +   r+psae++++++++l    +++ ++V++WFqN++a++++
  AHYPO_014867-RA  2 LEKMYSNegVRTPSAEQIQQITTRLrvygHIEGKNVFYWFQNHKARQRQ 50
                     9999997679*************************************97 PP
2Wus_type_Homeobox87.51.4e-281521565
  Wus_type_Homeobox 15 iLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +Le++y+ +G+rtP++e+iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqkq
    AHYPO_014867-RA  1 MLEKMYSnEGVRTPSAEQIQQITTRLRVYGHIEGKNVFYWFQNHKARQRQKQ 52
                       69****879*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.49E-8154IPR009057Homeodomain-like
PROSITE profilePS5007110.382151IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-5150IPR009057Homeodomain-like
PfamPF000466.0E-13250IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MLEKMYSNEG VRTPSAEQIQ QITTRLRVYG HIEGKNVFYW FQNHKARQRQ KQRHERLLAA  60
VAINNPNHHF SHHHYFPNNI NRPPLFPTSH LPAAFNNHHY LPNPNGKSHF SIFSIMLHFV  120
SCTSSLS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021716607.14e-40WUSCHEL-related homeobox 2-like
STRINGXP_010686171.12e-32(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.19e-29WUSCHEL related homeobox 2