PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014909-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 308aa    MW: 34505.5 Da    PI: 9.7692
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014909-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.53.8e-104386245
                     XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                     k+ k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  AHYPO_014909-RA 43 KDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 86
                     677999*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.2E-83689No hitNo description
SMARTSM003383.3E-842105IPR004827Basic-leucine zipper domain
PfamPF001703.4E-74386IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154488IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.94E-74689No hitNo description
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
PfamPF141447.3E-32128203IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MADASPRTDI STDADTDERN KRLKRFDATH AASDSSDRSK DTKDQKTLRR LAQNREAARK  60
SRLRKKAYVQ QLESSRLKLT QLEQELQRAR QQGIFISSSG DQAHSTSGNG AMAFDVEYAR  120
WLEEQNRQVN ELRAAVNARA GDAELRVIVD SVVAHHDDIF RLKTNAAKND VFHLLSGMWK  180
TPAERCFLWL GGFRSSELLK LLVNQLEPLT EQQVTAIQNL QQSSQEAEDA LSQGMDALQQ  240
SLAETLSSGS LGSSGSSGNA DNLRQQTLQQ MHRILTTRQS ARAILTIHDY FSRLRALSSL  300
WLARPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021752895.10.0transcription factor TGA2-like isoform X2
RefseqXP_021752896.10.0transcription factor TGA2-like isoform X2
RefseqXP_021762407.10.0transcription factor TGA2-like isoform X2
SwissprotQ391401e-167TGA6_ARATH; Transcription factor TGA6
SwissprotQ415581e-166HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A0K9RI250.0A0A0K9RI25_SPIOL; Uncharacterized protein
STRINGXP_010670518.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-133TGACG motif-binding factor 6