PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014915-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 242aa    MW: 27320.8 Da    PI: 7.7735
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014915-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.4e-3176132258
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                      dDgy+WrKYGqK +k+s++prsYY+Ct ++C +kk+ve+s +dp++++itYeg H h
  AHYPO_014915-RA  76 DDGYKWRKYGQKFIKNSPNPRSYYKCTNPRCGAKKQVEKSIDDPDTLIITYEGLHLH 132
                      8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-2968132IPR003657WRKY domain
PROSITE profilePS5081126.79670135IPR003657WRKY domain
SuperFamilySSF1182901.44E-2672132IPR003657WRKY domain
SMARTSM007749.9E-3575134IPR003657WRKY domain
PfamPF031063.4E-2576132IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MKDSTIWCND QQHEQMSAVY SGPTLLDIQK ALSVSTPSPP LSSFSHSRIS MLEKELSKTE  60
NKYTLKTKTC GTAMADDGYK WRKYGQKFIK NSPNPRSYYK CTNPRCGAKK QVEKSIDDPD  120
TLIITYEGLH LHFAYPYLSN TQIDVPNPPP PPLKKVKKTL PQNDHETIQK GTNEQTNNPK  180
HNIILETQTQ SDDSEQQTRT QGLLEDMVPL AIRNPYPCNE SIFDISNSFY PSSCPPCFSL  240
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-20741321674Probable WRKY transcription factor 4
2lex_A2e-20741321674Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021744050.14e-84probable WRKY transcription factor 49
TrEMBLA0A1S2Z3I18e-68A0A1S2Z3I1_CICAR; probable WRKY transcription factor 49
TrEMBLA0A2J6LG897e-68A0A2J6LG89_LACSA; Uncharacterized protein
STRINGXP_010678093.14e-75(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.13e-40WRKY DNA-binding protein 49