PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014925-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 608aa    MW: 66073 Da    PI: 8.1632
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014925-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.71.9e-08247267526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f + G Ck Gd C FaHg
  AHYPO_014925-RA 247 PCPEFKK-GSCKKGDDCEFAHG 267
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484038.39E-142138IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.4E-1214137IPR020683Ankyrin repeat-containing domain
PfamPF127963.6E-753125IPR020683Ankyrin repeat-containing domain
CDDcd002045.76E-1257152No hitNo description
PROSITE profilePS500889.2975890IPR002110Ankyrin repeat
SMARTSM002480.0045890IPR002110Ankyrin repeat
PROSITE profilePS5029714.50458130IPR020683Ankyrin repeat-containing domain
SMARTSM002481195127IPR002110Ankyrin repeat
PROSITE profilePS5010313.385242269IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-5242268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5246269IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5247267IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.334277301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MGIEITHQES TLNSTLLELA ASNDLKNFKL AVESLGLSID DVGIWYSRRI GSNKMGYEQR  60
TPLMIAAQYG SVNVLDYILD SGNSPVDVNR VSGSDRVTAL HCAVSGCSQS CDYVIQRLIS  120
SSANLNILDA NGNRASDLIP MLLKSSSMGN KQFETLLKSS GYSDSDVSST SGSVSDSDSD  180
SKKEFAVSEL PDINNGVYGS DEFRMYCFKI KPCSRAYTHD WTECPFAHPG ENARRRDPQK  240
YQYTCVPCPE FKKGSCKKGD DCEFAHGVFE SWLHPAQYRT RLCKDEIGCA RKVCFFAHRN  300
DELRPVYAST GSALPDVSSP GSGFNASSMS TPQMSPSCAP LSPNNGASPG SGGVFQGKSK  360
LMSPPNLLLP GSRLRSSFNA RDIESEIDME SRGLNRQHQY NQHHQQVLSP MLSPGWKNNN  420
IGRFSDMIPA TNLESAFGSI NVARKLSPPH VVESPRRKIS PPRAIDSPKS MAAAMLSSRA  480
AAFAKRSQSF IDRSGSSPVN MSSPMSTNMS DWGSPNGKLD WGINGQDLNK LRKSNSFGIR  540
GATNNVTRSS PPGFNEPDVS WVNSLVKDEA GVANLGAKAG SFGRNGVRAR NICSPWEQLY  600
IEEQVVI*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021769195.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE61e-175C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A0K9REK40.0A0A0K9REK4_SPIOL; Uncharacterized protein
STRINGXP_010689596.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-167C3H family protein