PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015016-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 616aa    MW: 66195.8 Da    PI: 6.7942
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015016-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.7e-32253310260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  d++++ei+Y+g+H+h+k
  AHYPO_015016-RA 253 DDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSP-DGTITEIIYKGTHDHPK 310
                      8****************************************.***************85 PP
2WRKY1084.7e-34428486159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+v+g+++prsYY+Ct++gCpv+k+ver+++dpk+v++tYeg+Hnhe
  AHYPO_015016-RA 428 LDDGYRWRKYGQKVVRGNPNPRSYYKCTHPGCPVRKHVERASHDPKAVITTYEGKHNHE 486
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.9E-27246311IPR003657WRKY domain
PROSITE profilePS5081122.699247311IPR003657WRKY domain
SuperFamilySSF1182909.42E-25249311IPR003657WRKY domain
SMARTSM007748.7E-34252310IPR003657WRKY domain
PfamPF031063.5E-24253309IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-38413488IPR003657WRKY domain
SuperFamilySSF1182909.15E-30420488IPR003657WRKY domain
PROSITE profilePS5081138.102423488IPR003657WRKY domain
SMARTSM007745.1E-40428487IPR003657WRKY domain
PfamPF031062.2E-26429486IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MIDGTPPSVT TVESPATLSS SGLLITTIDG SDLRKSTNEA CATNTGSNSN NSNARYKLMS  60
PAKLPISRSP SMSIPPIFSP TSFLESPVML SNLKGEPSPT TGSLFKPQML QGNSGGSSTF  120
PSVLNSSNSL DGTQSSGFEF KPNPGSYSFG GFSFSGSLVS SADPNQQQAG QSNQVQSDCA  180
HQSSDPSVAV KSELAPANEH NSTMVLPSSS VPPEVDSNEF NQKADSNSDV QSIQTPPLEL  240
KGSGSQVSER TSDDGYNWRK YGQKLVKGSE FPRSYYKCTH PNCEVKKLFE RSPDGTITEI  300
IYKGTHDHPK PQPNRRLPAG SMMSALEERS DRVPSFNAQE GMPTNSYGQP AHNSELSGTP  360
DLSPCGANDN SGEHNASQLN RSSDDAENDD PFGKRRRMEM GELDINSVVK PIREPRVVVQ  420
TVSEVDILDD GYRWRKYGQK VVRGNPNPRS YYKCTHPGCP VRKHVERASH DPKAVITTYE  480
GKHNHEVPTA RNSSHDTAAP AGTSIASRMS PHESNDAVSL DLGVGIRAAS GYKPGHPQQV  540
MSGDHLQGQP QFNGSNLMLL QPNSMSTFPG YVNGGMVLYG SRENHSQGNS IGNQPVNNSS  600
THSYQQNMGR ILMGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37253488877Probable WRKY transcription factor 4
2lex_A2e-37253488877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675876.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV01e-161WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0K9S1830.0A0A0K9S183_SPIOL; Uncharacterized protein
STRINGXP_010675876.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-133WRKY family protein