PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015040-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bZIP
Protein Properties Length: 459aa    MW: 50410.3 Da    PI: 7.2411
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015040-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.5e-10170213245
                      XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                      k+ k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  AHYPO_015040-RA 170 KDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 213
                      567899*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-7163216No hitNo description
SMARTSM003381.2E-8169232IPR004827Basic-leucine zipper domain
PfamPF001703.1E-7171213IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415171215IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-7173216No hitNo description
CDDcd147087.27E-22173225No hitNo description
PROSITE patternPS000360176191IPR004827Basic-leucine zipper domain
PfamPF141442.0E-33255330IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MGSQSLRVGV EAENEAANGM PSFDPSIPIS TALESSSISF RVSDFGVLAQ TNGFLVENVV  60
DIRNPGINLT KSSDRLVSTN PLLNISNNKA SGLLNINPSA TPSQNSVQNN LVSVSSGSLE  120
NWGESNMADA SPRTDISTDA DTDERNKRFD RLQMTTHAAS DSSDRSKEPK DQKTLRRLAQ  180
NREAARKSRL RKKAYVQQLE SSRLKLTQLE QELQRARQQG IFISSSGDQA HSTGGNGAMA  240
FDVEYARWLE EQNRQVNELR AAVNAHAGDA ELRVIVDSVV AHYDDIFRLK SNAAKNDVFH  300
LLSGMWKTPA ERCFLWLGGF RSSELLKLLV NQLEPLTEQQ VNAIQNLQQS SQQAEDALSQ  360
GMEALQQSLA ETLSSGSLGS SGSSGNVANY MGQMAMAMGK LGTLEGFIRQ ADNLRQQTLQ  420
QMHRILTTRQ SARALLAIHD YFSRLRALSS LWLARPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670518.10.0PREDICTED: transcription factor TGA6 isoform X1
SwissprotQ6IVC20.0TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLD7TX810.0D7TX81_VITVI; Uncharacterized protein
STRINGXP_010670518.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-171TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]