PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_015069-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

MIKC_MADS

Protein Properties

Length: 214aa MW: 24545.9 Da PI: 7.6285

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_015069-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.1	2e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvtfskRr+g++KKA EL vLCda v++i++s gk++ey++ AHYPO_015069-RA 9 KKIENQTNRQVTFSKRRKGLFKKADELVVLCDATVSIIMISGAGKFHEYPT 59 68***********************************************96 PP
2	K-box	57.8	4.9e-20	76	141	6	71
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 ++l++++++++++el++ + +++Lq+ +R+++G+ Le Ls+ eL++Leq++++s+ iR++K++ AHYPO_015069-RA 76 EVDLWAKQYQKMEEELQNYSDINRELQKDIRQRMGDLLEGLSFHELHNLEQEMQNSVHVIRERKYR 141 5679************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.801	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.7E-34	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.24E-36	2	80	No hit	No description
PRINTS	PR00404	7.7E-25	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.41E-33	3	93	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-23	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.7E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.7E-25	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.4E-13	82	141	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	10.818	84	195	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010093	Biological Process	specification of floral organ identity
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MARGKIQIKK IENQTNRQVT FSKRRKGLFK KADELVVLCD ATVSIIMISG AGKFHEYPTP 60 GITTKEIYDR FQRTLEVDLW AKQYQKMEEE LQNYSDINRE LQKDIRQRMG DLLEGLSFHE 120 LHNLEQEMQN SVHVIRERKY RNALVVHRSL LQENDLIPKD EPHYGLIDNG EYNNVLGYND 180 DSRILALRLN PCQPNLHGGA GSGSGSCVTY ALL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00077	ChIP-seq	Transfer from AT3G54340	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010672335.1	1e-101	PREDICTED: floral homeotic protein DEFICIENS isoform X1
Swissprot	E0CPH4	2e-75	AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBL	A0A089VRN4	4e-95	A0A089VRN4_CHEAL; APETALA3 (Fragment)
STRING	XP_010672335.1	1e-100	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	2e-66	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	AHYPO_015069-RA

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]