PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015097-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Dof
Protein Properties Length: 369aa    MW: 40629 Da    PI: 8.1402
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015097-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof26.81.1e-081471693961
           zf-Dof  39 yWtkGGalrnvPvGggrrknkks 61 
                       Wt+ G++rnvPvG g+rk+k+s
  AHYPO_015097-RA 147 SWTACGSMRNVPVGPGTRKSKNS 169
                      4*******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-5115167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MIQWGFNTDE DLVIASRIQP FTDVSASQDD DFDFDSESVS SDQIILCSKQ RKNRGVQEAT  60
KEKAKDIKQE RQRNSTSLLE QPKTPTSPST NTKNPKTIFK HKMSLSQDHS DQASSNSKSQ  120
NETTLKKPDK ILPCDSSVTT QNSKDCSWTA CGSMRNVPVG PGTRKSKNSA ASLDRHLVIP  180
DGLIRHDTRH DGTVFAFGLD SLLENQAKAK MLQLGEGSEN VVSNRVFRSE NDEKSPISLS  240
NSNSICNEKG ENCSPNSTSL GKHYREDEKK GALKQNELEN SRVLIPKTLR FDDPFETSKS  300
LKSTNPDTKN NHVGSSNGRL AFFGGLQQAK GVNYERTNVY QSGEGSSMVL QANPAAFLRS  360
LALHEIAQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842986.16e-89cyclic dof factor 1-like isoform X2
RefseqXP_021842987.16e-89cyclic dof factor 1-like isoform X2
RefseqXP_021842988.16e-89cyclic dof factor 1-like isoform X2
TrEMBLA0A0K9QK897e-77A0A0K9QK89_SPIOL; Uncharacterized protein
STRINGXP_010683163.11e-73(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62430.19e-19cycling DOF factor 1