PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015143-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 136aa    MW: 15037.5 Da    PI: 10.3006
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015143-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.76.9e-192676155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  AHYPO_015143-RA 26 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 76
                     59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.05E-202688No hitNo description
SMARTSM003801.5E-332792IPR001471AP2/ERF domain
PfamPF008474.8E-122776IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-192787IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-282787IPR001471AP2/ERF domain
PROSITE profilePS5103221.7072786IPR001471AP2/ERF domain
PRINTSPR003677.2E-92839IPR001471AP2/ERF domain
PRINTSPR003677.2E-95066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MVKSEAAKNQ TESSPISKSS TTLLKKKYKG VRMRSWGSWV SEIRAPNQKT RIWLGSYSTP  60
EAAARAYDAA LLCLKGSSAT SNLNFPLSAY SNCPLIPTNT NLIIYMMKVI FLCGVFADVT  120
SVLKYLHLKK YQYPS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855735.18e-33ethylene-responsive transcription factor ERF014-like
STRINGXP_010670581.12e-31(Beta vulgaris)
STRINGXP_004500566.18e-32(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.11e-24ERF family protein