PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015166-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 278aa    MW: 30743.1 Da    PI: 7.4205
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015166-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.53.3e-17163197135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  AHYPO_015166-RA 163 CLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRL 197
                      99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169929.8E-701249IPR016679Transcription factor, GATA, plant
SMARTSM004011.3E-16157207IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.503157193IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.9E-14161195IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.5E-15161221No hitNo description
CDDcd002022.48E-12162213No hitNo description
PfamPF003206.3E-15163197IPR000679Zinc finger, GATA-type
PROSITE patternPS003440163188IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEGSDFFVED LLDLSNGGDE MMTDTFIDSF TGHSTDSSSL TPVSDTCNSS YDDMAELEWL  60
SNFVEESDLH KLQFIPTNVS NQPGPLQSGP NPPTNVPAKA RSKRSRIAPC DFSTRLLIVS  120
SPSPATSSSD TGLNPSPGPK KQSSKRRENG SGPECGPGEV RRCLHCAAEK TPQWRTGPMG  180
PKTLCNACGV RYKSGRLVPE YRPAASPTFI STKHSNSHRK VMELRRQKEV HRHHHQHHHQ  240
QQQQFIGNGG NHMMMAGGED YFNYHHYVGG TDYRQMI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021765329.11e-133GATA transcription factor 12-like
SwissprotP697811e-68GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A0K9QVQ61e-109A0A0K9QVQ6_SPIOL; GATA transcription factor
STRINGXP_010691426.11e-122(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-67GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]