PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015218-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 612aa    MW: 65930.8 Da    PI: 6.5481
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015218-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.7e-32251308260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  ers  d++++ei+Y+g+H+h+k
  AHYPO_015218-RA 251 DDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSP-DGTITEIIYKGTHDHPK 308
                      8****************************************.***************85 PP
2WRKY107.66.3e-34426484159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+v+g+++prsYY+Ct++gCpv+k+ver+++dpk+v++tYeg+Hnh+
  AHYPO_015218-RA 426 LDDGYRWRKYGQKVVRGNPNPRSYYKCTHPGCPVRKHVERASHDPKAVITTYEGKHNHD 484
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-27243309IPR003657WRKY domain
PROSITE profilePS5081122.699245309IPR003657WRKY domain
SuperFamilySSF1182906.54E-25246309IPR003657WRKY domain
SMARTSM007748.7E-34250308IPR003657WRKY domain
PfamPF031063.5E-24251307IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-38411486IPR003657WRKY domain
SuperFamilySSF1182907.45E-30418486IPR003657WRKY domain
PROSITE profilePS5081138.4421486IPR003657WRKY domain
SMARTSM007744.9E-40426485IPR003657WRKY domain
PfamPF031062.2E-26427484IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MDGTSHSITT VESPATSSST GLIISTIESS DLRRSTDEPC ATTIGLNNNN SSSNARYKLM  60
SPAKLPISRS PSMSIPPMFS PTSFLESPIM LSNLKGEPSP TTGSLFKPQM LQAASGGSSA  120
FSSAINCSNP LDETQSSSFE FKPNPGSYSF GGFSFSGSLV SSVDPNQQQA ALATQVQPEC  180
PSQASDPAVA AKNEVAPANE QSSNMVLSST SVPPEVDSNE FSQIGDSNNE GQTPPVEQKG  240
LGSQVSERTS DDGYNWRKYG QKLVKGSEFP RSYYKCTHPN CEVKKLFERS PDGTITEIIY  300
KGTHDHPKPQ PNRRLPAGSM MSTLEEKSDR ATPFNAHEGM PANSYSQISH NNESSGTPDL  360
SPCGANDNSG ELGASPLHRI TDDAEDDDLF AKRRKMEMGE MDINSVVKPI REPRVVVQTV  420
SEVDILDDGY RWRKYGQKVV RGNPNPRSYY KCTHPGCPVR KHVERASHDP KAVITTYEGK  480
HNHDVPTARN SSHDTSAPAA PTMPSRMGPH EGNDAVSLNL GVGIRTASGF IPGHHQMAGE  540
HLQGQPHFNG PNLLLLQPNP MSNFPGYVNG GMVLYGSREN HSQGHSIGNQ PVNHSSTNSY  600
QQNMGRILMG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-38251486877Probable WRKY transcription factor 4
2lex_A5e-38251486877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010675876.10.0PREDICTED: probable WRKY transcription factor 20
SwissprotQ93WV01e-164WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A0K9S1830.0A0A0K9S183_SPIOL; Uncharacterized protein
STRINGXP_010675876.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-144WRKY family protein