PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015282-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ZF-HD
Protein Properties Length: 272aa    MW: 30531.1 Da    PI: 6.7896
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015282-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.51.2e-314095258
      ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                     ++vrY+eClkNhA+ +Gg avDGCgEfm++ g+eg+++al+CaAC+CHRnFHR+e +
  AHYPO_015282-RA 40 SNVRYRECLKNHAVGVGGLAVDGCGEFMAA-GAEGSIDALRCAACNCHRNFHRKEFS 95
                     689**************************9.999********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.0E-284193IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-224393IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.0E-284393IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.1354493IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.29E-19195269IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-32198270IPR009057Homeodomain-like
TIGRFAMsTIGR015654.7E-26209264IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MMMEFEDDHE EDQEEEEEEE ESEMAITPTF QKQQNLTASS NVRYRECLKN HAVGVGGLAV  60
DGCGEFMAAG AEGSIDALRC AACNCHRNFH RKEFSPPEKI SIPPPPHHNN NQLTLYSPRP  120
HHPHQIYQLY PYNRTTPLSG LGYQHLHVTA PQRAMNLGSP TEVRNMQHGQ QQKQEMTMGD  180
ETATGVGFGG TMTTSPGGCG GSNSSGKNKR FRTKFTQEQK DKMLELAEKL GWKIQKEDEN  240
AVQQFCNETG VKRHVLKVWM HNNKHTLGKK P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-252092661875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1177841e-123EF117784.1 Amaranthus hypochondriacus clone GB-AMM-071 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010681042.19e-97PREDICTED: zinc-finger homeodomain protein 1
SwissprotA2YWA68e-68ZHD2_ORYSI; Zinc-finger homeodomain protein 2
SwissprotQ6ZB908e-68ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBLA0A3L6QRZ61e-70A0A3L6QRZ6_PANMI; Zinc-finger homeodomain protein 1
STRINGXP_010681042.13e-96(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-57homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]