PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015462-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family TCP
Protein Properties Length: 299aa    MW: 31746.8 Da    PI: 7.001
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015462-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.51.4e-391598183
              TCP  1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssas 83
                     +a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++tieWLlqqa+pa++++tgt++++a+++  + s + s+s
  AHYPO_015462-RA 15 PAPKRTSTKDRHTKVDGRGRRIRMPAQCAARVFQLTRELGHRSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLSLSVRRSGS 98
                     589*******************************************************************98854444444433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3720113IPR005333Transcription factor, TCP
PROSITE profilePS5136927.8142276IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MENDQTTSLP GPKKPAPKRT STKDRHTKVD GRGRRIRMPA QCAARVFQLT RELGHRSDGE  60
TIEWLLQQAE PAVIAATGTG TIPANFTSLS LSVRRSGSTV SSGLHTRLGY SNNYFGNNNL  120
YVSPPNWLGF SNMLMINGDH QLSDPSRRIN MFPNCGFVEL SSSSSPTLLN LPPSGDSNTC  180
HGQKCAPKVD ENDDDDDDPR QDLNVGHGSG HGPGFGTSSS NNGTVASGLH FMNFVNNNNN  240
NNTPMGYFTE QSMAGPSGGG FNGPFGPNNG LRHVTPGTII GSNPQEGSNN VVQGDASC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021722923.11e-117transcription factor TCP15-like
TrEMBLA0A0K9QRH03e-96A0A0K9QRH0_SPIOL; Uncharacterized protein
STRINGXP_010683217.11e-114(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.14e-46TCP family protein