PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015489-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 239aa    MW: 26280.5 Da    PI: 7.2932
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015489-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000435577123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C + F ++  L  H++ H
  AHYPO_015489-RA 55 FSCNYCRRKFFSSQALGGHQNAH 77
                     89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.79E-65282No hitNo description
PROSITE profilePS5015711.3025582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MANSHEGEEQ NYTHFPFSLD LNLCFDPNKE DLTQDDKVTV TGDNQISPPS NSRVFSCNYC  60
RRKFFSSQAL GGHQNAHKRE RTIAKRAMRI GALADRHVSL ASLPLHGSSP VASFPISSRP  120
SIDIQAHHGS MMMMMHHPHL QPSDLHHQQH LFDHGSAAPA AKFDGQNGYL LGGVPVFNTV  180
PFWPGSFRQQ GAMVIFIGGD DGRFDKINLI LELRDGNNGA HVAQFGREIV VGGSKMNE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021758721.14e-74zinc finger protein 7-like
TrEMBLA0A0J8BE612e-71A0A0J8BE61_BETVU; Uncharacterized protein
STRINGXP_010694429.13e-72(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.14e-23zinc finger protein 4