PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015499-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB
Protein Properties Length: 253aa    MW: 28169.8 Da    PI: 9.5902
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015499-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+++Ed +l+++++++G+g +W + ++++g++R++k+c++rw++yl
  AHYPO_015499-RA 14 RGPWSPQEDTKLKNYIHKFGTGgNWIALPHKIGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding40.85.1e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd +++ +    G++ W+ Ia+ ++ gRt++++k++w++
  AHYPO_015499-RA  69 GGFTEEEDNIILSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.654962IPR017930Myb domain
SuperFamilySSF466896.39E-2711109IPR009057Homeodomain-like
SMARTSM007173.8E-121364IPR001005SANT/Myb domain
PfamPF002491.8E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-241569IPR009057Homeodomain-like
CDDcd001671.39E-91662No hitNo description
PROSITE profilePS5129422.36263117IPR017930Myb domain
SMARTSM007173.6E-1267115IPR001005SANT/Myb domain
PfamPF002491.1E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-2470117IPR009057Homeodomain-like
CDDcd001671.00E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0035987Biological Processendodermal cell differentiation
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000021Biological Processregulation of ion homeostasis
GO:2000067Biological Processregulation of root morphogenesis
GO:0048226Cellular ComponentCasparian strip
GO:0000975Molecular Functionregulatory region DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPQ EDTKLKNYIH KFGTGGNWIA LPHKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTEEEDNIIL SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGR  120
TKQSHINGSK EDQLSPSALE RLQLHMQLQS QQLSLPNPFS PFNNPSICPK LHPQMIQNPS  180
NYNNFDNHQD SGIMGSNNGM IEDHMEDSSL NGSSSSSGLS PNHVNDVTNH GFDALKSNGY  240
STGMQRMVDG LG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866500.11e-105transcription factor MYB36
SwissprotQ9FKL24e-95MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A0K9QMI21e-103A0A0K9QMI2_SPIOL; Uncharacterized protein
STRINGXP_010688500.15e-99(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-77myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]