PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015505-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family CO-like
Protein Properties Length: 378aa    MW: 41890.7 Da    PI: 5.6281
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015505-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.91e-081755439
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htv 39
                     r C++++   + l+C+ +  +lC +C  ++H +   H++
  AHYPO_015505-RA 17 RPCDTCNTASALLYCKADAAFLCGTCDAKIHTSvrvHER 55
                     68*****************************77888875 PP
2zf-B_box22.52.4e-075699340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvv 40
                      + C+ +e+ ++   C+ +   lC +C   +H +       H+++
  AHYPO_015505-RA 56 IWLCEVCEQAPAVVTCKADAATLCSSCDHDIH-SvnplahrHERI 99
                     578****************************9.447888556665 PP
3CCT70.54.2e-24312355144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++lRY+eK+k+RkF+K+irY+sRKa+Ae+RpR+KGrFvk++
  AHYPO_015505-RA 312 REARVLRYREKKKNRKFQKTIRYASRKAYAETRPRIKGRFVKRS 355
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.3E-71458IPR000315B-box-type zinc finger
PROSITE profilePS501199.9831458IPR000315B-box-type zinc finger
CDDcd000211.01E-51758No hitNo description
PfamPF006431.3E-61755IPR000315B-box-type zinc finger
PROSITE profilePS5011910.29654101IPR000315B-box-type zinc finger
PfamPF006431.7E-557101IPR000315B-box-type zinc finger
CDDcd000211.76E-657101No hitNo description
SMARTSM003364.0E-459101IPR000315B-box-type zinc finger
PROSITE profilePS5101716.529312354IPR010402CCT domain
PfamPF062035.2E-18312354IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAVNDEKNTI KGLLSGRPCD TCNTASALLY CKADAAFLCG TCDAKIHTSV RVHERIWLCE  60
VCEQAPAVVT CKADAATLCS SCDHDIHSVN PLAHRHERIP VIPFLDSAVE AVTARSIACA  120
AASSAFLVPD DLDSIPSLPA FVDDVIEDDA DAWLIPNPNN TFLYNDSDVL NFSHGCQNVV  180
KSLQFQQQDI KPIVDGNRTY AFTDSIVPTH SESQVTNNNK FAMDTDYSFF EKCFNIDFTQ  240
PDKLHKKNIN SELFSAFNNC DYQSISSSDI GVVPDSNTNT NTNSMSSEVS YSFARSSASN  300
GRSSNEAPVM DREARVLRYR EKKKNRKFQK TIRYASRKAY AETRPRIKGR FVKRSDNSET  360
SQFDFAADNE YGVVPVF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856630.11e-161zinc finger protein CONSTANS-LIKE 3-like
TrEMBLA0A0K9QX531e-160A0A0K9QX53_SPIOL; Uncharacterized protein
STRINGXP_010688513.11e-144(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.13e-75CONSTANS-like 5