PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015509-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family CO-like
Protein Properties Length: 379aa    MW: 43360.1 Da    PI: 4.9105
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015509-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.37.3e-091558340
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                     +r C+ + +k++++fC  ++ +lC++C +  H+       H++v
  AHYPO_015509-RA 15 ARPCESCLKKRASWFCPADDAFLCNTCDSLVHSAnelagrHKRV 58
                     678*****************************668888899887 PP
2CCT66.67e-23334376143
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                      Rea+++RY+eKr+tR+F+KkirY++RK +Ae+RpR+KGrFvk+
  AHYPO_015509-RA 334 REARVSRYREKRRTRLFSKKIRYQVRKLNAEKRPRLKGRFVKR 376
                      9****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.3E-111360IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2531360IPR000315B-box-type zinc finger
PfamPF006436.3E-71558IPR000315B-box-type zinc finger
CDDcd000211.73E-91660No hitNo description
PROSITE profilePS5101716.003334376IPR010402CCT domain
PfamPF062039.4E-18334376IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MITQKTANSV GGKTARPCES CLKKRASWFC PADDAFLCNT CDSLVHSANE LAGRHKRVRL  60
ETASSKPNPN TAVPSWHQGF SKKARTPRNN KAKSSYVRQI VPVVPEINNN DDNNEGFVEE  120
EEENEENDVV FNVPNFDHDD NNHDDGFNDV SLIGFDGDEW NNMHGFIPLE NEFESLLEFK  180
PELKPEPEPE PDIEVVKIEG EDDVGTSDHC IFDWSIDMEN EMLNFDLNHG CSGGEEEEEH  240
KVVVGPKEEE NYEMNMNKRR KILLRLNYEE VINAWATMGC SSPWTNGQRP DFDPDHGAWP  300
GPNCMGAASP IGFYQDEKEW IGLRGDVKVG NEEREARVSR YREKRRTRLF SKKIRYQVRK  360
LNAEKRPRLK GRFVKRTI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344360RRTRLFSKKIRYQVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021744733.11e-125zinc finger protein CONSTANS-LIKE 6-like
TrEMBLA0A0K9RWY61e-115A0A0K9RWY6_SPIOL; Uncharacterized protein
STRINGVIT_01s0011g03520.t011e-91(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-31B-box type zinc finger protein with CCT domain