PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015552-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Dof
Protein Properties Length: 342aa    MW: 36702.6 Da    PI: 8.0068
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015552-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.43.5e-3956117263
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                      ++++ kcprCds++tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkksss
  AHYPO_015552-RA  56 HDQNPKCPRCDSSHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKSSS 117
                      578899****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2850110IPR003851Zinc finger, Dof-type
PfamPF027011.3E-3258114IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.75160114IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106298IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGDHIGHGTL SEEISTGRLD SSSSPSGVTT TDCMLAAACS SRSGPPLVDR RLRPPHDQNP  60
KCPRCDSSHT KFCYYNNYSL SQPRYFCKTC RRYWTKGGTL RNIPVGGGCR KNKKSSSKKS  120
NCNDPQNQPI NGSITGLGSP SNSNPIDLQL SFPHEVQFPP HLANLIGAQM GLGGGSFMEE  180
GLIRPIDFME SKYDDLVGGS RGNDHIMGSD HFSLLGGVGL GYNSTGSNNT TTTFGGIYSS  240
NSPFGLSSNE IHDGNPGISF MNQRMLLPYD GNNNHHHHHH QSGVDVKPNP KVLSLEWQDQ  300
GSNNVAKNTS FGHNVNGTSG ALNSWSGFMG GFQSPTTNPL V*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021733619.11e-129dof zinc finger protein DOF5.6-like
TrEMBLA0A0K9S1W21e-110A0A0K9S1W2_SPIOL; Uncharacterized protein
STRINGXP_010678773.11e-127(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.13e-43Dof family protein