PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015555-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 374aa    MW: 42429.4 Da    PI: 4.4124
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015555-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.24.3e-19197239145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ WT+eE+ ++++a+++lG++ W+ Ia++++ gRt++++k++w+
  AHYPO_015555-RA 197 KDEWTEEEERIIINAHAKLGNK-WAEIANMLP-GRTDNSIKNHWN 239
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.4E-15182247IPR009057Homeodomain-like
PROSITE profilePS5129422.798192246IPR017930Myb domain
SMARTSM007173.2E-17196244IPR001005SANT/Myb domain
PfamPF002492.1E-17197239IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.4E-20199240IPR009057Homeodomain-like
CDDcd001678.66E-15199242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDFDEQFSSQ LPLFSMDNAS SSNFIDEFPL KNDDVNPIET FNVNVSSPLP NNYPLIPIHQ  60
PNYLDSLTNF SNDCLSNSDF HKNKSYINQK TNSSFVPHLN NFNQTSHEVL EHSQLINSMN  120
MTNPSIAQTY NPFNYSELNL SNNNFSNENS STTPIINPTN ISSDLSTITT LKKAKGGKKK  180
SNELKAKWTT EEDRLLKDEW TEEEERIIIN AHAKLGNKWA EIANMLPGRT DNSIKNHWNA  240
TKRRHFANRK SRTKTLRQSS ILDDYMKTLT PQTINGAYLN QSSSSTMAFM EENTQIGQMD  300
ASSGSQLGQE QDFNELPNFN FDPQLFDDSD INYLLDDTNF NMDDNNGGDV GNDLTNDTML  360
QAENKNDPDL NWI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-1919724456103C-Myb DNA-Binding Domain
1msf_C3e-1919724456103C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678927.17e-75PREDICTED: transcription factor MYB98
STRINGXP_010678927.13e-74(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-25myb domain protein 98