PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_015574-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 171aa MW: 19652.6 Da PI: 7.1433

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_015574-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.6	1.9e-07	3	35	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +f L l+P++ K++Ka+iL A++YIk+L+ AHYPO_015574-RA 3 RGFLSLSALIPHL-----HKMDKASILSDATKYIKELE 35 57899*****8.....6**************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.98E-5	1	37	No hit	No description
PROSITE profile	PS50888	11.172	1	34	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.06E-10	2	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-5	4	35	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-10	5	44	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MTRGFLSLSA LIPHLHKMDK ASILSDATKY IKELEEQAKK LEEQSTIRIV ECAYLVNNIM 60 SNQQVLKHNN NNNNNNNNYN NNNNNVLEIE AKMLNHNILI RIHSLKKEGL IQKILEEIVN 120 LRLTTINCQT IPFGTYAIDV TITAQVSDDF DMTIKDLMKH LREVLQNYIF *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010683072.2	2e-51	PREDICTED: transcription factor bHLH25-like
TrEMBL	Q9ZSQ9	2e-47	Q9ZSQ9_MESCR; Transporter homolog (Fragment)
STRING	XP_010683072.1	9e-51	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	8e-21	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_015574-RA