PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_015602-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NAC

Protein Properties

Length: 267aa MW: 30510.5 Da PI: 8.7576

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_015602-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175	2.2e-54	10	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+ +yLk+++ ++++++ ++i+evdiyk++Pw+Lp k+ +e+ewyfF++rd+ky++g r+nrat sgyWkatg+dk+++s AHYPO_015602-RA 10 LPPGFRFHPTDEELIIHYLKNQIMSRPCPV-SIIPEVDIYKFDPWQLPDKAVFGENEWYFFTPRDRKYPNGIRPNRATLSGYWKATGTDKAIYS 102 79**************************.89***********7777899*********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg+kk Lvfykgr pkg+ktdW+mheyrl AHYPO_015602-RA 103 -GTKYVGIKKALVFYKGRPPKGTKTDWIMHEYRL 135 .999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-67	6	162	IPR003441	NAC domain
PROSITE profile	PS51005	61.295	10	162	IPR003441	NAC domain
Pfam	PF02365	1.8E-27	11	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009825	Biological Process	multidimensional cell growth
GO:0009835	Biological Process	fruit ripening
GO:0009908	Biological Process	flower development
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MDSNWSSNCL PPGFRFHPTD EELIIHYLKN QIMSRPCPVS IIPEVDIYKF DPWQLPDKAV 60 FGENEWYFFT PRDRKYPNGI RPNRATLSGY WKATGTDKAI YSGTKYVGIK KALVFYKGRP 120 PKGTKTDWIM HEYRLIESKH KPIKQHGSMR LDDWVLCRIY KKRQVARVED KGEDSTLQGQ 180 VSNEGGSEGS SDQAIKFPRT QSLSYLLDLD YLGPIAHLLN DNTSNFDLQT TMGHNVGFDP 240 NMGPYSSYPN IGLSCHQING NPSYYK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-72	10	167	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-72	10	167	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-72	10	167	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-72	10	167	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-72	10	167	20	173	NAC domain-containing protein 19
3swm_B	1e-72	10	167	20	173	NAC domain-containing protein 19
3swm_C	1e-72	10	167	20	173	NAC domain-containing protein 19
3swm_D	1e-72	10	167	20	173	NAC domain-containing protein 19
3swp_A	1e-72	10	167	20	173	NAC domain-containing protein 19
3swp_B	1e-72	10	167	20	173	NAC domain-containing protein 19
3swp_C	1e-72	10	167	20	173	NAC domain-containing protein 19
3swp_D	1e-72	10	167	20	173	NAC domain-containing protein 19
4dul_A	1e-72	10	167	17	170	NAC domain-containing protein 19
4dul_B	1e-72	10	167	17	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00221	DAP	Transfer from AT1G69490	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021864198.1	1e-153	NAC transcription factor 29-like
Refseq	XP_021864199.1	1e-153	NAC transcription factor 29-like
Swissprot	K4BNG7	1e-111	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A0K9RTR3	1e-152	A0A0K9RTR3_SPIOL; Uncharacterized protein
STRING	XP_010683140.1	1e-147	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-103	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	AHYPO_015602-RA

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]