PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015608-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ZF-HD
Protein Properties Length: 354aa    MW: 38015.9 Da    PI: 8.1432
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015608-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.37.6e-3352108459
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                      v+YkeClkNhAa+ Ggha+DGCgEfmp ++++ +++++lkCaACgCHRnFHRre+ee
  AHYPO_015608-RA  52 VVYKECLKNHAANSGGHALDGCGEFMPVPNASsADPTSLKCAACGCHRNFHRREPEE 108
                      79**************************9999899******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.6E-2752106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-2252105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.0E-3054105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.27654105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.97E-18193266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-29196266IPR009057Homeodomain-like
TIGRFAMsTIGR015652.9E-25205262IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDLTARETGS GLSIIPPTKS PEAESETPPR IQPSKAISFS NGVLKRHAPP CVVYKECLKN  60
HAANSGGHAL DGCGEFMPVP NASSADPTSL KCAACGCHRN FHRREPEELM GNTGTGFTHM  120
IEYHPHHRHH PLPPPGSNPM TGPAVGSRGG GRSPGSSSPP PISSTYYPGS APHMLLALSG  180
GGPENGPLNG PHQLMNSSSS HPASRKRFRT KFTQNQKDKM YEFAEKVGWK MQKTNEEMVN  240
GFCNEIGVEK GVFKVWMHNN KNTFGKRSAS AITTAGDVNG VTNYSNLNTN PINNNDLNDD  300
NPIIDEDEIG NLNGNGNSNS SSINNHNSSN HHIHHHHHQQ YNGKNTNGSS SSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-192042631675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021721411.11e-131zinc-finger homeodomain protein 10-like
SwissprotQ9LXG02e-69ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A0K9RAN81e-125A0A0K9RAN8_SPIOL; Uncharacterized protein
STRINGXP_010693250.11e-115(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-67homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]