PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_015615-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NAC

Protein Properties

Length: 310aa MW: 35217.4 Da PI: 5.0091

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_015615-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.8	3.5e-56	18	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL +kv ++++++ vi e+d++++ePwdLpk++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ AHYPO_015615-RA 18 LPPGFRFHPTDEELITHYLSEKVLDTNFKT-IVIGEADLNTTEPWDLPKQAKMGEKEWYFFVVRDRKYPTGLRTNRATEAGYWKATGKDKEIYR 110 79***********************999.89***********99999************************************* PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfy+grapkgekt+Wvmheyrle AHYPO_015615-RA 111 -EKTLVGMKKTLVFYTGRAPKGEKTNWVMHEYRLE 144 .999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-62	10	165	IPR003441	NAC domain
PROSITE profile	PS51005	58.216	18	165	IPR003441	NAC domain
Pfam	PF02365	2.6E-29	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MEIESNSTNN MVEEQMELPP GFRFHPTDEE LITHYLSEKV LDTNFKTIVI GEADLNTTEP 60 WDLPKQAKMG EKEWYFFVVR DRKYPTGLRT NRATEAGYWK ATGKDKEIYR EKTLVGMKKT 120 LVFYTGRAPK GEKTNWVMHE YRLEGKYSKY KDSKNDWVIS RVFNKNSAAK TPNTASQTVS 180 LETSLPPLMD SSPYSNTSET TIAAAATTSS HVNCFSSTCL LDDNKVKKPD NQEQENHVNG 240 MVNTPFSPLL FGCDCSQFTD SFLTQDQSML KLLLEGKMIN NNSGFEGMVD ESSGFLNQEI 300 ISHDSFWDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-57	15	170	14	170	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-57	15	170	14	170	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-57	15	170	14	170	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-57	15	170	14	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-56	15	170	17	173	NAC domain-containing protein 19
3swm_B	1e-56	15	170	17	173	NAC domain-containing protein 19
3swm_C	1e-56	15	170	17	173	NAC domain-containing protein 19
3swm_D	1e-56	15	170	17	173	NAC domain-containing protein 19
3swp_A	1e-56	15	170	17	173	NAC domain-containing protein 19
3swp_B	1e-56	15	170	17	173	NAC domain-containing protein 19
3swp_C	1e-56	15	170	17	173	NAC domain-containing protein 19
3swp_D	1e-56	15	170	17	173	NAC domain-containing protein 19
4dul_A	7e-57	15	170	14	170	NAC domain-containing protein 19
4dul_B	7e-57	15	170	14	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010693263.1	1e-132	PREDICTED: NAC domain-containing protein 92
Swissprot	Q9FLJ2	3e-96	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A061EF12	1e-103	A0A061EF12_THECC; NAC domain containing protein 80
STRING	XP_010693263.1	1e-132	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	3e-95	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	AHYPO_015615-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]