PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015616-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 430aa    MW: 47830.2 Da    PI: 6.856
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015616-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.5e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+ +++++G g+W++ + + g+ R++k+c++rw +yl
  AHYPO_015616-RA 14 KGPWTPEEDQKLLAYIEEHGHGNWRALPTKAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-24566IPR009057Homeodomain-like
PROSITE profilePS5129424.14965IPR017930Myb domain
SMARTSM007177.9E-151363IPR001005SANT/Myb domain
PfamPF002491.2E-161461IPR001005SANT/Myb domain
SuperFamilySSF466891.31E-221489IPR009057Homeodomain-like
CDDcd001672.35E-121688No hitNo description
PROSITE profilePS500904.7746888IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-96899IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MGRSPCCDKL GLKKGPWTPE EDQKLLAYIE EHGHGNWRAL PTKAGLQRCG KSCRLRWTNY  60
LRPDIKPIAT HLPKRTDNEI KNYWNTHLKK RLTKMGIDPV THKPKNDALH SAGDGGQHSK  120
NAANLSHMAQ WESARLEAEA RLVRQSSKLR LSNNSNNTSS FNNCVPHSEL HLNDHHYITM  180
SDSTGTGTSP TPRCLDDFKA WQRGWTSTST TSTDANNDDI IGISMGSTTG IGGGVGLGIE  240
SPTSTLSFSE NAPPPVPVVP NMGNGAVIEF MGHHQNHDQD HHHMHNQEMG IKKEGDHHHI  300
QHNNEHEWMS SLSFMPSHHI NEQRSHDHDH QDDHDKNHDE GFMDGFTELL LSTNSTTTIS  360
DHQSATKTSV IGDNNNNNNN NNNNNNNNST GTTTTTNSSK GSDYYEDNKT YWNSILNLVN  420
SSPSHSPMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-1312925108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670239.11e-134PREDICTED: transcription factor MYB36-like
TrEMBLA0A0K9QEU91e-125A0A0K9QEU9_SPIOL; Uncharacterized protein
STRINGXP_010670239.11e-134(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-79myb domain protein 16