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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AHYPO_015620-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 290aa MW: 32077.3 Da PI: 10.0833 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| AHYPO_015620-RA | genome | BYU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 306.9 | 7.3e-94 | 5 | 289 | 4 | 301 |
GAGA_bind 4 dgsre...rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd...maflqrdkalaernkalverdnkllalllvensl 91
dg+r+ rn+gyy+ +k +l+l +r i +r+ al+ +++ +++rd +++q d l + + + nk++++l++++s
AHYPO_015620-RA 5 DGFRNdsfRNWGYYDTP--IK---SLNLHLGGGDRKPLIGSRDSALI-PNSNFHPRDyviPNYHQVDYHLRD-ACFFRDNSNKFFNILPTSHSY 91
56666678*******99..55...45555556788888889998666.677899***988899999999998.556667889*********998 PP
GAGA_bind 92 asalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
a + ++ + + ++ +s+q+ +qle+s +e ++++a+p +++ + kkr+ +k +k +k+kk+kk ++ sk+ + ++ +
AHYPO_015620-RA 92 AVPTEPAPTHAPTHHQSHSMQM--IRQLEPSNEE----RMVQAEP----SNVEMNDGPLKKRSAGKAEKPPKTKKPKKAPSGSKDGGSGST--Q 173
7666666666677777777777..3455554444....4344444....5566677788888999999999999**997777755444444..8 PP
GAGA_bind 186 rskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl 279
r+k+ kk++++v+ng+++D+st+P+PvCsCtGa++qCY+WG+GGWqSaCCtt +SvyPLP+stkrrgaRiagrKmS gafkk+LekLaaeGy++
AHYPO_015620-RA 174 RAKSAKKTTEVVINGIDMDISTIPIPVCSCTGAPQQCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSLGAFKKVLEKLAAEGYNF 267
9********************************************************************************************* PP
GAGA_bind 280 snpvDLkdhWAkHGtnkfvtir 301
snp+DL++hWAkHGtnkfvtir
AHYPO_015620-RA 268 SNPIDLRTHWAKHGTNKFVTIR 289
*********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MDDGDGFRND SFRNWGYYDT PIKSLNLHLG GGDRKPLIGS RDSALIPNSN FHPRDYVIPN 60
YHQVDYHLRD ACFFRDNSNK FFNILPTSHS YAVPTEPAPT HAPTHHQSHS MQMIRQLEPS 120
NEERMVQAEP SNVEMNDGPL KKRSAGKAEK PPKTKKPKKA PSGSKDGGSG STQRAKSAKK 180
TTEVVINGID MDISTIPIPV CSCTGAPQQC YRWGSGGWQS ACCTTGMSVY PLPMSTKRRG 240
ARIAGRKMSL GAFKKVLEKL AAEGYNFSNP IDLRTHWAKH GTNKFVTIR*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 141 | 155 | KRSAGKAEKPPKTKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
