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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
AHYPO_015621-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 286aa MW: 31624.8 Da PI: 10.0435 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| AHYPO_015621-RA | genome | BYU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 303.8 | 6.2e-93 | 5 | 285 | 4 | 301 |
GAGA_bind 4 dgsre...rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd...maflqrdkalaernkalverdnkllalllvensl 91
dg+r+ rn+gyy+ +k +l+l +r i +r+ al+ +++ +++rd +++q d l + + + nk++++l++++s
AHYPO_015621-RA 5 DGFRNdsfRNWGYYDTP--IK---SLNLHLGGGDRKPLIGSRDSALI-PNSNFHPRDcviPNYHQVDYHLRD-ACFFRDNSNKFFNILPTSHS- 90
56666678*******99..55...45555556688888888988666.677899***988899999999998.5566677899******8887. PP
GAGA_bind 92 asalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185
+v ++ + ++ +s+q+ +qle+s +e ++++a+p +++ + kkr+ +k +k +k+kk+kk ++ sk+ + ++ +
AHYPO_015621-RA 91 ---YAVPTEPAPTHHQSHSMQM--IRQLEPSNEE----RMIQAEP----SNVEMNDGPLKKRSAGKAEKPPKTKKPKKAPSGSKDGGSGST--Q 169
...4445566677777777777..3455555444....4444444....5566677788888999999999999***97777755444444..8 PP
GAGA_bind 186 rskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl 279
r+k+ kk++++v+ng+++D+st+P+PvCsCtGa++qCY+WG+GGWqSaCCtt +SvyPLP+stkrrgaRiagrKmS gafkk+LekLaaeGy++
AHYPO_015621-RA 170 RAKSAKKTTEVVINGIDMDISTIPIPVCSCTGAPQQCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSLGAFKKVLEKLAAEGYNF 263
9********************************************************************************************* PP
GAGA_bind 280 snpvDLkdhWAkHGtnkfvtir 301
snp+DL++hWAkHGtnkfvtir
AHYPO_015621-RA 264 SNPIDLRTHWAKHGTNKFVTIR 285
*********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 286 aa
Download sequence Send
to blast |
MDDGDGFRND SFRNWGYYDT PIKSLNLHLG GGDRKPLIGS RDSALIPNSN FHPRDCVIPN 60
YHQVDYHLRD ACFFRDNSNK FFNILPTSHS YAVPTEPAPT HHQSHSMQMI RQLEPSNEER 120
MIQAEPSNVE MNDGPLKKRS AGKAEKPPKT KKPKKAPSGS KDGGSGSTQR AKSAKKTTEV 180
VINGIDMDIS TIPIPVCSCT GAPQQCYRWG SGGWQSACCT TGMSVYPLPM STKRRGARIA 240
GRKMSLGAFK KVLEKLAAEG YNFSNPIDLR THWAKHGTNK FVTIR*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 137 | 151 | KRSAGKAEKPPKTKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
