PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015626-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 482aa    MW: 52711 Da    PI: 8.9657
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015626-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.13.7e-33230286259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      dDgynWrKYGqK+vkgse+prsYYrCts++Cpvkkkvers  d++++ei+Y+g+Hnh+
  AHYPO_015626-RA 230 DDGYNWRKYGQKQVKGSEYPRSYYRCTSPNCPVKKKVERSY-DGHITEIIYKGQHNHD 286
                      8****************************************.***************7 PP
2WRKY105.33.3e-33368426159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gC+v+k+ver+++d ++v++tYeg+Hnh+
  AHYPO_015626-RA 368 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTVGCNVRKHVERASTDLSAVITTYEGKHNHD 426
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.121224288IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-29226288IPR003657WRKY domain
SuperFamilySSF1182902.48E-26228288IPR003657WRKY domain
SMARTSM007742.0E-36229287IPR003657WRKY domain
PfamPF031062.6E-25230286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.4E-36353428IPR003657WRKY domain
SuperFamilySSF1182907.85E-29360428IPR003657WRKY domain
PROSITE profilePS5081137.769363428IPR003657WRKY domain
SMARTSM007743.8E-38368427IPR003657WRKY domain
PfamPF031062.7E-25369426IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MSDYFKDGHH FFGQQQKPTI IIPPKPINDS SSNPFTGAPS PGPPSFTGLF GSDPFQEHEF  60
RSFSDLLAGA LATQLPPSGD LKLVNDNWET NHHNNKVETR ETGNNGNGSG FKQNRPGNLV  120
LPTSIPAYNI SPGFSPSSFL SSPNTFLMSP QQTLAHITAL SQAHNLSIQN DTSSLPSSTL  180
ISSFQPTMIF NAATPSSRLP TQQPNTTERN KAAAVLQHNN FPAAVDKPAD DGYNWRKYGQ  240
KQVKGSEYPR SYYRCTSPNC PVKKKVERSY DGHITEIIYK GQHNHDRPTT GRSRGNNRDG  300
SFMGGDNAGF WSGGVSVRDQ YDHNSAISMQ LNGPSDSEES GQSDGGFTHR TVTEPKIVVQ  360
TRSDIDLLDD GYRWRKYGQK VVKGNPNPRS YYKCTTVGCN VRKHVERAST DLSAVITTYE  420
GKHNHDVPAT RGSNAAINTA NIHATAQIKL PDNNNGSGQM SFGTNNQTPI TLRLKEEQLV  480
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-37230429878Probable WRKY transcription factor 4
2lex_A3e-37230429878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670218.20.0PREDICTED: probable WRKY transcription factor 4
TrEMBLA0A0K9QGS91e-180A0A0K9QGS9_SPIOL; Uncharacterized protein
STRINGXP_010670218.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.12e-94WRKY DNA-binding protein 3