PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_015650-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C2H2

Protein Properties

Length: 568aa MW: 63623.5 Da PI: 6.6316

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_015650-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	456	476	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C++Cgk F ++ ++++H+++ H AHYPO_015650-RA 456 CNKCGKAF-QQAEMEKHMKVfH 476 ******.********988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03152	8.7E-46	91	259	IPR004854	Ubiquitin fusion degradation protein UFD1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence Send to blast
MDFELRRARE KLQREQKQRK EMAKLKIERE KRAKQEASRR REAIEVVQRA RRLDAAQAQI 60 KADEQMAESL LSGGGIMFHR VLEPMLYPGV GDKIKLPPSC FTELSDQGAF DKGPVYFKLS 120 VAGRESSSDV PADRENHGVT HSGVLEFTAE EGFADLPPHV WINLFPSEAP ATPLIEIQYV 180 RLPKGSYAKL QPEEVSFLDI PNHKAVLETS LRQHATLSQD DMITVRHGEL TFKLRVLELK 240 PSQSVSVLET DIEVEIVNPV SASEKTDLKV LKPLSFGAPE SGIVEEGLYM YYKFSLDNDV 300 WSTIESGNAR IEVKLEAETD LGDTDLYISK HPLMFPTHHQ HHWSSHDVGS KTLILSSKDQ 360 NLGFGTYSIG IYGFRGTTKY KLLVSIQENT KLGQQAGLST STADVDSVEC GNCKHYIPNR 420 SIALHEAYCR RHNLVCHYAG CGVVLRVEDA ANHVHCNKCG KAFQQAEMEK HMKVFHEPIH 480 CSCGIVLEKE EMVQHQSSDC PMRMITCRFC GDIVQAGNCP MDMRDRLRGL SEHESVCGSR 540 TAPCDSCGRA VMLKEMDIHQ IAVHPNN*

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence Send to blast

MDFELRRARE KLQREQKQRK EMAKLKIERE KRAKQEASRR REAIEVVQRA RRLDAAQAQI  60
KADEQMAESL LSGGGIMFHR VLEPMLYPGV GDKIKLPPSC FTELSDQGAF DKGPVYFKLS  120
VAGRESSSDV PADRENHGVT HSGVLEFTAE EGFADLPPHV WINLFPSEAP ATPLIEIQYV  180
RLPKGSYAKL QPEEVSFLDI PNHKAVLETS LRQHATLSQD DMITVRHGEL TFKLRVLELK  240
PSQSVSVLET DIEVEIVNPV SASEKTDLKV LKPLSFGAPE SGIVEEGLYM YYKFSLDNDV  300
WSTIESGNAR IEVKLEAETD LGDTDLYISK HPLMFPTHHQ HHWSSHDVGS KTLILSSKDQ  360
NLGFGTYSIG IYGFRGTTKY KLLVSIQENT KLGQQAGLST STADVDSVEC GNCKHYIPNR  420
SIALHEAYCR RHNLVCHYAG CGVVLRVEDA ANHVHCNKCG KAFQQAEMEK HMKVFHEPIH  480
CSCGIVLEKE EMVQHQSSDC PMRMITCRFC GDIVQAGNCP MDMRDRLRGL SEHESVCGSR  540
TAPCDSCGRA VMLKEMDIHQ IAVHPNN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1zc1_A	7e-26	91	264	45	204	Ubiquitin fusion degradation protein 1
2yuj_A	5e-26	91	256	40	188	Ubiquitin fusion degradation 1-like
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021768293.1	0.0	uncharacterized protein LOC110732635
TrEMBL	A0A0K9RU25	0.0	A0A0K9RU25_SPIOL; Uncharacterized protein
STRING	XP_010677397.1	0.0	(Beta vulgaris)

Link Out ? help Back to Top
Phytozome	AHYPO_015650-RA