PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015670-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 497aa    MW: 54240.6 Da    PI: 6.8337
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015670-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.5e-30204263159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+++d +++++tYeg+Hnh+
  AHYPO_015670-RA 204 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApLCPVRKQVQRCSSDMSILITTYEGTHNHP 263
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-31189265IPR003657WRKY domain
SuperFamilySSF1182901.03E-26197265IPR003657WRKY domain
PROSITE profilePS5081128.621199265IPR003657WRKY domain
SMARTSM007743.0E-36204264IPR003657WRKY domain
PfamPF031061.8E-26205263IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
DDDEVETTRG EMIEVKKENE RLKKMLQKIE NDYKSLQMRF FILQRDESLS TQSQTIEESQ  60
IQKEEPEVSL CLGLQIPNNN NNNNNNNNNN NNNNRKKLDH YDNDHSSTSS TLLVKEEAKL  120
MSEGLSLGLD HFKGPINLSD EGSEKNTEME NDAKGNGIGE TCPTSKVLTT GKEDDVKELD  180
ESAQGSNTKR ARVSVRARCD TPTMNDGCQW RKYGQKIAKG NPCPRAYYRC TVAPLCPVRK  240
QVQRCSSDMS ILITTYEGTH NHPLPISATA MASTTSAAAS ILLSGSSSSH TNLLTSSSAP  300
LMTTTNLNGL NFTLYQNNNN NPRSNTQFNI PSSSSPTPPT ITLDLTSSSS SSSHFHKHHH  360
NFSSSTSLDF SSSQLKPTFP LAWPNSNSNS NSNYSTLFPL NNNKTLLLPS IGSINFGTKP  420
TFEQTNYLER IKHIANTTTT SSSSSSSSSS SSSSSSQQFL TETLTKVLTS DPSFQSAVAA  480
AISSMVGTTN NAQHAGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-21191265174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021758451.11e-157probable WRKY transcription factor 72 isoform X1
TrEMBLA0A0K9R1E71e-141A0A0K9R1E7_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010693337.11e-132(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-63WRKY DNA-binding protein 72