PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_015818-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 165aa MW: 18652.6 Da PI: 10.6602

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_015818-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.5	3.6e-06	58	94	11	52
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +R +++ ++++ L+el+ + +K + a++L++A+ YIk AHYPO_015818-RA 58 KRSQKLSDKISALQELVSPY-----GKTDTASVLQEACIYIK 94 6999************99.....9*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.274	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-9	49	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-7	58	119	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
TIKDVRKCVN GVRLAQRHNN VLSNVSSIDA SKSSNKRKVI EQIVDNARKF KTMDAPLKRS 60 QKLSDKISAL QELVSPYGKT DTASVLQEAC IYIKIIHQEI RRLSISYLEV RTLQSRLQGD 120 IDRQIDLQSR GLCLVPVSIM KSITRENWVD HHPMSRANTR SSII*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010669841.1	1e-79	PREDICTED: transcription factor bHLH111 isoform X1
Swissprot	Q8GXT3	4e-22	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A2H5NYP8	5e-30	A0A2H5NYP8_CITUN; Uncharacterized protein (Fragment)
STRING	XP_010669841.1	4e-79	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-24	bHLH family protein

Link Out ? help Back to Top
Phytozome	AHYPO_015818-RA

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]