PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015837-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 80aa    MW: 9224.17 Da    PI: 8.966
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015837-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.5e-131360348
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     +WT   d+ +  a +++ ++   +W+ Ia+++g g+t +++k+r+q++l
  AHYPO_015837-RA 13 SWTLKQDKAFESALNKYNKDtpdRWHNIAKEVG-GKTVEEVKNRYQDLL 60
                     7******************9*************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-8661IPR009057Homeodomain-like
PROSITE profilePS512949.619664IPR017930Myb domain
SMARTSM007172.4E-111062IPR001005SANT/Myb domain
SuperFamilySSF466895.96E-151268IPR009057Homeodomain-like
PfamPF002493.1E-111360IPR001005SANT/Myb domain
CDDcd001671.45E-81460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MDRNSNNSTR SSSWTLKQDK AFESALNKYN KDTPDRWHNI AKEVGGKTVE EVKNRYQDLL  60
HDVQNIEAGR VPFPYNWAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-22874371RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012457904.13e-28PREDICTED: protein RADIALIS-like 3
RefseqXP_016678633.13e-28PREDICTED: protein RADIALIS-like 3
RefseqXP_017648656.13e-28PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1733e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0K9S0L11e-33A0A0K9S0L1_SPIOL; Uncharacterized protein
STRINGGorai.011G101700.11e-27(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.16e-27RAD-like 6